Creates a meta file in HDF5 format from a Seurat object.
Usage
CreateMetaFile(
srt,
MetaFile,
name = NULL,
write_tools = FALSE,
write_misc = FALSE,
ignore_nlevel = 100,
compression_level = 6,
overwrite = FALSE
)Arguments
- srt
The Seurat object.
- MetaFile
Path to the output meta file. If not provided, the file will be named "Meta.hdf5" in the current directory.
- name
Name of the dataset. If not provided, the name will default to the Seurat object's project name.
- write_tools
A logical value indicating whether to write the tools information to the meta file. Default is FALSE.
- write_misc
A logical value indicating whether to write the miscellaneous information to the meta file. Default is FALSE.
- ignore_nlevel
The number of levels above which a metadata field will be ignored. Default is 100.
- compression_level
The level of compression for the meta file. Default is 6.
- overwrite
A logical value indicating whether to overwrite existing metadata and reductions in the meta file. Default is FALSE.
@seealso
CreateDataFilePrepareSCExplorerFetchH5RunSCExplorer