This function performs ALRA (Adaptively-thresholded Low Rank Approximation) imputation
on a gene expression matrix.
Usage
RunALRA(data_mat, k = NULL, q = 0.01, verbose = TRUE)
Arguments
- data_mat
Expression matrix with genes as rows and cells as columns
- k
Number of dimensions for SVD (default: NULL, automatically determined)
- q
Quantile for automatic k selection (default: 0.01)
- verbose
Print progress messages
Value
Imputed expression matrix