This function performs MAGIC (Markov Affinity-based Graph Imputation of Cells)
imputation on a gene expression matrix.
Usage
RunMAGIC(data_mat, t = 3, k = 10, verbose = TRUE)
Arguments
- data_mat
Expression matrix with genes as rows and cells as columns
- t
Time parameter for diffusion (default: 3)
- k
Number of nearest neighbors (default: 10)
- verbose
Print progress messages
Value
Imputed expression matrix