Reorder idents by the gene expression — SrtReorder • SCP

Reorder idents by the gene expression

Usage

SrtReorder(
  srt,
  features = NULL,
  reorder_by = NULL,
  layer = "data",
  assay = NULL,
  log = TRUE,
  distance_metric = "euclidean"
)

Arguments

srt: A Seurat object.
features: Features used to reorder idents.
reorder_by: Reorder groups instead of idents.
layer: Specific layer to get data from.
assay: Specific assay to get data from.
log: Whether log1p transformation needs to be applied. Default is TRUE.
distance_metric: Metric to compute distance. Default is "euclidean".