Convert spatial coordinates from h5ad to Seurat format — ConvertH5ADSpatialToSeurat • srtdisk

Convert spatial coordinates from h5ad to Seurat format

Usage

ConvertH5ADSpatialToSeurat(
  h5ad_file,
  seurat_obj = NULL,
  assay_name = "Spatial",
  verbose = TRUE
)

Arguments

h5ad_file: H5AD file handle or path
seurat_obj: Seurat object to add spatial data to
assay_name: Name of the assay to associate spatial data with
verbose: Print progress messages

Value

Modified Seurat object with spatial data