Convert h5mu spatial data to Seurat format for a specific modality

Convert h5mu spatial data to Seurat format for a specific modality

Usage

ConvertH5MUSpatialToSeurat(
  h5mu_file,
  seurat_obj,
  modality,
  assay_name,
  verbose = FALSE
)

Arguments

h5mu_file

H5File connection to h5mu file

seurat_obj

Seurat object

modality

Modality name in h5mu file

assay_name

Corresponding assay name in Seurat

verbose

Logical

Value

Modified Seurat object