Convert spatial coordinates from h5ad to Seurat format

Convert spatial coordinates from h5ad to Seurat format

Usage

H5ADSpatialToSeurat(
  h5ad_file,
  seurat_obj = NULL,
  assay_name = "Spatial",
  verbose = TRUE
)

Arguments

h5ad_file

H5AD file handle or path

seurat_obj

Seurat object to add spatial data to

assay_name

Name of the assay to associate spatial data with

verbose

Print progress messages

Value

Modified Seurat object with spatial data