Converts a loom file to h5seurat format. By default uses streaming conversion. The loom dense matrix is converted to sparse CSC for h5seurat.
Usage
LoomToH5Seurat(
source,
dest,
assay = "RNA",
overwrite = FALSE,
gzip = 4L,
verbose = TRUE,
stream = TRUE
)Arguments
- source
Path to input .loom file
- dest
Path for output .h5seurat file
- assay
Assay name to use (default: "RNA")
- overwrite
If TRUE, overwrite existing output
- gzip
Gzip compression level (0-9)
- verbose
Show progress messages
- stream
If TRUE (default), stream fields directly. If FALSE, load as Seurat then save as h5seurat.