Reads a SOMA experiment and writes it to h5ad format. Since SOMA is not
an HDF5 format, this conversion routes through a Seurat intermediate.
Usage
SOMAToH5AD(
source,
dest,
measurement = "RNA",
overwrite = FALSE,
verbose = TRUE
)
Arguments
- source
URI of the input SOMA experiment
- dest
Path for the output .h5ad file
- measurement
Name of the measurement to export (default: "RNA")
- overwrite
If TRUE, overwrite existing output
- verbose
Show progress messages
Value
Invisibly returns dest