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Convert Seurat spatial data to h5ad format

Source: R/SpatialConversion.R
SeuratSpatialToH5AD.Rd

Convert Seurat spatial data to h5ad format

Usage

SeuratSpatialToH5AD(
  seurat_obj,
  h5ad_file,
  library_id = "library_1",
  verbose = TRUE
)

Arguments

seurat_obj

Seurat object with spatial data

h5ad_file

H5AD file handle or path to write to

library_id

Library ID for spatial data (default: "library_1")

verbose

Print progress messages