Stream h5seurat to loom (direct HDF5-to-HDF5)

Reads h5seurat sparse matrix (CSC), densifies, transposes to genes x cells, and writes to loom format.

Usage

.stream_h5seurat_to_loom(h5seurat_path, loom_path, gzip = 4L, verbose = TRUE)

Arguments

h5seurat_path

Path to input h5seurat file

loom_path

Path to output loom file

gzip

Integer gzip compression level

verbose

Logical