Load an AnnData Zarr store as a Seurat object

Direct conversion from AnnData Zarr format (.zarr directory) to Seurat object. Supports zarr v2 stores as produced by Python anndata. This enables reading of cloud-native AnnData stores from CELLxGENE, Human Cell Atlas, and SpatialData workflows.

Usage

readZarr(file, assay.name = "RNA", verbose = TRUE, ...)

Arguments

file

Path to .zarr directory

assay.name

Name for the primary assay (default: "RNA")

verbose

Show progress messages

...

Additional arguments (currently unused)

Value

A Seurat object